Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs6601279 chr8:8908231 G/A 0.000162 108 19.33 17.23 6.63 KM Plot
LAML rs6603781 chr1:1158631 C/T 0.000127 111 12.65 23.3 0 KM Plot
LAML rs66524579 chr13:71336727 CA/C 1.71E-5 111 0 5 16.23 KM Plot
LAML rs66540442 chr19:19560756 TATCTTATATTAA/T 0.000146 111 16.27 10.65 0 KM Plot
LAML rs66680794 chr19:12581627 G/A 4.11E-5 109 6.13 23.3 13.1 KM Plot
LAML rs66708907 chr19:12540578 C/G 1.87E-5 111 6.13 22.37 13.1 KM Plot
LAML rs66737681 chr2:242232601 CA/C 6.5E-5 111 1.53 16.17 16.77 KM Plot
LAML rs6678503 chr1:43352685 A/G 0.000186 109 1.02 10.67 15.23 KM Plot
LAML rs66797613 chr10:1090469 C/T 1.92E-5 110 13.15 20.83 2.55 KM Plot
LAML rs66860913 chr10:78951585 G/C 6.81E-5 111 13.2 16.3 0 KM Plot
LAML rs6688233 chr1:9335745 A/G 5.53E-5 111 2.55 16.23 15.7 KM Plot
LAML rs66911259 chr2:3226305 A/AC 3.53E-5 111 0 13.1 15.23 KM Plot
LAML rs6706729 chr2:238398580 T/C 0.000124 111 14.17 15.7 0 KM Plot
LAML rs6712684 chr2:3225829 C/T 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs6716274 chr2:3224086 C/T 5.94E-5 111 0 14.7 15.2 KM Plot